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Whole Plasmid Sequencing
Whole Plasmid Sequencing

starting from $ 4.99 Nanopore Sequencing

Overview

Nanopore long-read technology has completely revolutionized the way we sequence plasmids. At Quintara, we provide fast, convenient, and comprehensive sequencing services for plasmids up to 25 kb, powered by Nanopore sequencing and our proprietary workflows. We deliver high-quality results with an overnight turnaround at a highly cost-effective flat rate. With over 1,000 drop boxes across the US, submitting your sample is fast and easy.


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What Is Whole Plasmid Sequencing Used For?


Full-length Sequence Verification
Insert and Assembly Confirmation
Resolution of Complex Regions
Pre-Experimental Quality Control

•  De novo consensus sequence assembly

•  Primer-free, full-length validation 

•  Detection of sequence variants and structural indels


•  Directional cloning confirmation 

•  Multi-fragment assembly QC 

•  Characterization of large or complex inserts


•  Assessment of viral vector integrity 

•  Validation of plasmid structural stability

•  Accurate verification of high-GC and highly repetitive regions


•  ORF and frame-shift verification 

•  Fusion tag and linker confirmation

•  Rapid sequence-to-bench turnaround


Need help with a custom order?
Workflow

Quintara delivers a fully integrated, end-to-end sequencing solution. Upon receipt of your DNA samples, processing begins immediately at the most convenient regional site to ensure rapid turnaround. All samples are handled by our experienced scientists using proprietary library preparation workflows, followed by long-read sequencing on the Oxford Nanopore platform. The resulting data are then processed through customized bioinformatics pipelines to deliver accurate, high-quality results.

Services


Service NameSizeSample TypePriceTurnaround Time*

WPS Express+

<10kb 

Plasmid, RCA Product

$4.99

Overnight

Bacteria

$4.99
WPS Standard<25kb                

Plasmid, RCA Product

$15.00

Overnight

Bacteria

$20.00

2 days


* Your project clock starts once we receive your samples.

+ For the WPS Express service, customers need confirm that the sequencing sample does not contain the following types of sequences: high localized-GC regions (i.e. CAG promotor), hairpins and hairpin-like structures such as LTRs (Long Terminal Repeats) and ITRs (AAV) (Inverted Terminal Repeats)





Choose the Services According to Your Needs

WPS Express

Overnight

$4.99


WPS Standard

1 day / 3 days

$15   /  $20

Designed For

Cost-effective sequencing for non-complex plasmids.

Ideal for high-throughput construct screening.


The industry standard for confirming plasmid sequence and quality. 

Ideal for routine plasmid verification.

Sample Type

Sample Size:<10kb

Sequence Requirements: Does not contain high-GC 

regions (e.g., CAG-rich promoters) or hairpin-forming, 

highly repetitive sequences (such as LTRs or ITRs), and includes a common origin of replication (ori).            

Sample Size:<25kb

Sequence Requirements: None                              

Sample Input

•  Plasmid DNA (10μL, 20-100ng/μL) 

•  RCA Product (10μL) 

•  Colony Suspension (10μL) 

•  Bacterial Overnight Culture (30μL) 

•  Glycerol Stock (30μL) 

•  Agar Plate

•  Plasmid DNA (10μL, 50-500ng/μL) 

•  RCA Product (10μL) 

•  Colony Suspension (30μL) 

•  Bacterial Overnight Culture (30μL) 

•  Glycerol Stock (30μL) 

•  Agar Plate

Deliverables

•  FASTA File

•  AB1 File (chromatogram) 

•  GenBank File

•  Per-Base Data File

•  Summary File

•  FASTA  File

•  AB1 File (chromatogram) 

•  GenBank File

•  Per-Base Data File

•  Raw Data FASTQ File

•  Alignment File

•  QC Report 


FAQ
What are the requirements for submitting plasmid samples?

• For high-copy plasmids, we kindly request a minimum volume of 5 µL with DNA concentrations ranging between 100-200 ng/µL. We recommend submitting at least double the minimum volume so that we have enough DNA to repeat any reactions if necessary. 

• For low-copy plasmids, please provide us with the highest DNA concentration you can obtain from a miniprep with a minimum volume of 10 µL. This ensures we have the best chance of accurately sequencing your sample despite the lower amount of starting material.

Are colony samples sequenced directly?

• We use your colony/bacterial sample to grow a culture followed by a miniprep prior to sequencing. Therefore, colony samples typically have a 2-day turnaround time.

• While sequencing of colony samples using quicker methods is possible, these alternatives result in a higher failure rate and lower quality data. Purified plasmid DNA consistently yields the most accurate and reliable sequencing data. By starting with purified plasmid, we significantly reduce the risk of sequencing errors and reaction failures, ensuring that your data is both high-quality and dependable.

How do I prepare my samples for WPS Nanopore sequencing?

For WPS-Express: (< 10 kb)

• Purified Plasmid/RCA Product - Required concentration: 25–100 ng/µL, Volume: >10 µL 

• Overnight Culture/Glycerol Stock - Volume: >30 µL

• Colony Suspension - Pick a single colony, suspend in 20 µL water, Volume: >10 µL 

• Agar Plate - Submit plate with order form and indicate colonies to pick


For WPS-Standard: (< 25 kb)

• High-Copy Plasmid/RCA Product -  Required concentration: 50–100 ng/µL, Volume:  >10 µL 

• Low-Copy Plasmids - Required concentration: As high as possible, Volume: >10 µL 

• Colony Suspension - Pick a single colony, suspend in 20 µL water, Volume: >10 µL 

• Overnight Culture - Volume: >20 µL


For WPS-Pro: (< 25 kb)

• Purified Plasmid DNA - Required concentration: ≥ 200–300 ng/µl, Volume: ≥ 10 µl, Container: 200 µl strip tubes, Buffer: Elution buffer or nuclease-free water 

• Overnight Culture - Buffer: LB, OD600: 2.0–3.0, Volume: ≥ 1.5 ml, Container: 2 ml microfuge tubes

What is the typical turnaround time for WPS Nanopore sequencing?

• For WPS-Express service, the turnaround time is next morning for all types of samples upon receipt. 

• For WPS-Standard service, the turnaround time is next morning for plasmid and RCA samples, while bacterial samples require an additional day to process.

Do you provide a QC report for WPS Nanopore sequencing?

Yes, we provide a QC report for WPS-Standard orders. This includes metrics on read length distribution, purity, multimer percentage, mapping statistics, and more. For WPS-Express, QC reports are currently not included.

Do you provide raw reads for Nanopore sequencing?

Yes, for WPS-Standard, we provide raw FASTQ files in the data package. These files are commonly used for downstream analysis and can be processed with various bioinformatics tools. However, for WPS-Express, raw FASTQ files are currently not included in the data package, though we are working on making them available in the future.

How are failed samples handled in the Nanopore sequencing process?

If your sequencing results fail or if you contact us because the results did not meet your expectations, we will promptly investigate the cause. If the issue is determined to be from our end, we will update you with our findings and repeat the sequencing at no extra charge. If the cause is related to the samples themselves, you may need to resubmit new samples with a new order.

What should I do if I think there is an issue with the results?

If you believe there is an issue with your sequencing results, please contact us anytime via email at sales.us@quintarabio.com. We will review your data and investigate potential causes, including sample quality, preparation issues, or sequencing errors.

Resources

Whole Plasmid Sequencing -Express

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Quintara service Check list

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Plasmid DNA Preparation_Quintara_2025

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